Format for converting from R Markdown to an HTML document.
html_document(
toc = FALSE,
toc_depth = 3,
toc_float = FALSE,
number_sections = FALSE,
anchor_sections = FALSE,
section_divs = TRUE,
fig_width = 7,
fig_height = 5,
fig_retina = 2,
fig_caption = TRUE,
dev = "png",
df_print = "default",
code_folding = c("none", "show", "hide"),
code_download = FALSE,
self_contained = TRUE,
theme = "default",
highlight = "default",
highlight_downlit = FALSE,
math_method = "default",
mathjax = "default",
template = "default",
extra_dependencies = NULL,
css = NULL,
includes = NULL,
keep_md = FALSE,
lib_dir = NULL,
md_extensions = NULL,
pandoc_args = NULL,
...
)
TRUE
to include a table of contents in the output
Depth of headers to include in table of contents
TRUE
to float the table of contents to the left of the
main document content. Rather than TRUE
you may also pass a list of
options that control the behavior of the floating table of contents. See the
Floating Table of Contents section below for details.
TRUE
to number section headings
TRUE
to show section anchors when mouse hovers
for all headers. A list can also be passed with style
and/or
depth
to customize the behavior. See
Anchor Sections Customization section.
Wrap sections in <div>
tags, and attach identifiers to the
enclosing <div>
rather than the header itself.
Default width (in inches) for figures
Default height (in inches) for figures
Scaling to perform for retina displays (defaults to 2, which
currently works for all widely used retina displays). Set to NULL
to
prevent retina scaling. Note that this will always be NULL
when
keep_md
is specified (this is because fig_retina
relies on
outputting HTML directly into the markdown document).
TRUE
to render figures with captions
Graphics device to use for figure output (defaults to png)
Method to be used for printing data frames. Valid values
include "default", "kable", "tibble", and "paged". The "default" method
uses a corresponding S3 method of print
, typically
print.data.frame
. The "kable" method uses the
knitr::kable
function. The "tibble" method uses
the tibble package to print a summary of the data frame. The "paged"
method creates a paginated HTML table (note that this method is only valid
for formats that produce HTML). In addition to the named methods you can
also pass an arbitrary function to be used for printing data frames. You
can disable the df_print
behavior entirely by setting the option
rmarkdown.df_print
to FALSE
. See
Data
frame printing section in bookdown book for examples.
Enable document readers to toggle the display of R code
chunks. Specify "none"
to display all code chunks. Specify
"hide"
or "show"
to hide or show all R code chunks by
default, and let readers toggle the states on browsers. See the
Code folding
Embed the Rmd source code within the document and provide a link that can be used by readers to download the code.
Produce a standalone HTML file with no external dependencies, using data: URIs to incorporate the contents of linked scripts, stylesheets, images, and videos. Note that even for self contained documents MathJax is still loaded externally (this is necessary because of its size).
One of the following:
A bslib::bs_theme()
object (or a list of bslib::bs_theme()
argument values)
Use this option for custom themes using Bootstrap 4 or 3.
In this case, any .scss
/.sass
files provided to the css
parameter may utilize the theme
's underlying Sass utilities
(e.g., variables, mixins, etc).
NULL
for no theme (i.e., no html_dependency_bootstrap()
).
A character string specifying a Bootswatch 3 theme name (for backwards-compatibility).
Syntax highlight engine and style. See the Highlighting section below for details.
"default" (and "textmate") will use highlightjs as syntax highlighting engine instead of Pandoc.
Any other value will be passed as Pandoc's highlighting style. Pandoc's built-in styles include "tango", "pygments", "kate", "monochrome", "espresso", "zenburn", "haddock" and "breezedark".
Two custom styles are also included, "arrow", an accessible color scheme, and "rstudio", which mimics the default IDE theme. Alternatively, supply a path to a .theme to use a custom Pandoc style. Note that custom theme requires Pandoc 2.0+.
Pass NULL
to prevent syntax highlighting.
TRUE
to use the downlit package as
syntax highlight engine to highlight inline code and R code chunks
(including providing hyperlinks to function documentation). The package
needs to be installed to use this feature.
Only Pandoc color schemes are supported with this engine. With
highlight = "default"
, it will use the accessible theme called
"arrow". To learn more about downlit highlighting engine, see
https://downlit.r-lib.org/.
Math rendering engine to use. This will define the math method to use with Pandoc.
It can be a string for the engine, one of "mathjax", "mathml", "webtex", "katex", "gladtex", or "r-katex"
or "default" for mathjax
.
It can be a list of
engine
: one of
"mathjax", "mathml", "webtex", "katex", or "gladtex".
url
: A specific url to use with mathjax
, katex
or webtex
.
Note that for engine = "mathjax"
, url = "local"
will use a local version of MathJax (which is
copied into the output directory).
For example,
output:
html_document:
math_method:
engine: katex
url: https://cdn.jsdelivr.net/npm/katex@0.11.1/dist
See Pandoc's Manual about Math in HTML for the details about Pandoc supported methods.
Using math_method = "r-katex"
will opt-in server side rendering using
KaTeX thanks to katex R package. This is
useful compared to math_method = "katex"
to have no JS dependency, only a
CSS dependency for styling equation.
Include mathjax. The "default" option uses an https URL from a
MathJax CDN. The "local" option uses a local version of MathJax (which is
copied into the output directory). You can pass an alternate URL or pass
NULL
to exclude MathJax entirely.
Pandoc template to use for rendering. Pass "default" to use
the rmarkdown package default template; pass NULL
to use pandoc's
built-in template; pass a path to use a custom template that you've created.
Note that if you don't use the "default" template then some features of
html_document
won't be available (see the Templates section below for
more details).
Extra dependencies as a list of the
html_dependency
class objects typically generated by
htmltools:htmlDependency()
.
CSS and/or Sass files to include. Files with an extension of .sass
or .scss are compiled to CSS via sass::sass()
. Also, if theme
is a
bslib::bs_theme()
object, Sass code may reference the relevant Bootstrap
Sass variables, functions, mixins, etc.
Named list of additional content to include within the
document (typically created using the includes
function).
Keep the markdown file generated by knitting.
Directory to copy dependent HTML libraries (e.g. jquery,
bootstrap, etc.) into. By default this will be the name of the document with
_files
appended to it.
Markdown extensions to be added or removed from the
default definition of R Markdown. See the rmarkdown_format
for
additional details.
Additional command line options to pass to pandoc
Additional function arguments to pass to the base R Markdown HTML
output formatter html_document_base
R Markdown output format to pass to render
See the online
documentation for additional details on using the html_document
format.
R Markdown documents can have optional metadata that is used to generate a document header that includes the title, author, and date. For more details see the documentation on R Markdown metadata.
R Markdown documents also support citations. You can find more information on the markdown syntax for citations in the Bibliographies and Citations article in the online documentation.
There are three highlighting engines available to HTML documents:
It does highlighting in the browser, using javascript It
can only be used with the default template (i.e template = "default"
)
and it has two styles ("default" and "textmate"). When activated, it adds
two additional dependencies to the output file: a JS script and a CSS file.
For now, this is the default engine for the default template - this could
change in the future.
Pandoc's built-in highlighting.engine works with any template,
default or custom, and style can be chosen among the built-in ones ("tango",
"pygments", "kate", "monochrome", "espresso", "zenburn", "haddock" and
"breezedark") or a path to a custom theme ".theme" file (see Details in the
Pandoc Manual).
rmarkdown includes two custom themes to select with highlight
parameter:
"arrow", an accessible style using colors optimized for accessibility and color contrast
"rstudio", a color scheme close to RStudio's default highlighting and highglightjs's textmate.
Custom themes are only available for Pandoc 2.0 and above.
downlit is an R package that
provides a syntax highlighting engine in R. It will also do automatic
linking of R code (requires internet connectivity). It is activated only if
highlight_downlit = TRUE
and only affects R code, leaving
highlighting for other languages unchanged. The default color scheme is
the accessible theme "arrow".
It requires some CSS in the template to correctly style links. This is included in the default template, but if you want to use with a custom template, you will need to add this to your template:
$if(highlight-downlit)$
<style type="text/css">
code a:any-link {
color: inherit; /* use colour from syntax highlighting */
text-decoration: underline;
text-decoration-color: #ccc;
}
</style>
$endif$
This will be the default to activate anchor sections link on header
There are currently two options to modify the default behavior
style
Select a predefined visual style:
style = "dash"
, the default, uses #, a minimalist choice that evokes the id selector from HTML and CSS.
style = "symbol"
will use a link symbol (🔗︎)
style = "icon"
will use an svg icon. ()
You can also customize using a css rule in your document. For example, to get a pictogram (🔗):
About how to apply custom CSS in R Markdown document, see https://bookdown.org/yihui/rmarkdown-cookbook/html-css.html
depth
Select the maximum header level to add the anchor link to. For example, this yaml will use the symbol style and only with level 1 and 2 headings:
If omitted, anchor will be added to all headers (equivalent of
depth=6
). You can also set anchors manually with depth = 0
using this syntax
You may specify a list of options for the toc_float
parameter which
control the behavior of the floating table of contents. Options include:
collapsed
(defaults to TRUE
) controls whether
the table of contents appears with only the top-level (H2) headers. When
collapsed the table of contents is automatically expanded inline when
necessary.
smooth_scroll
(defaults to TRUE
) controls
whether page scrolls are animated when table of contents items are navigated
to via mouse clicks.
print
(defaults to TRUE
) controls
whether the table of contents appears when user prints out the HTML page.
Code blocks become foldable by specifying "show" or "hide" to the
code_folding
parameter. The state can be toggled individually on
browsers. The document-wide toggle button is also provided for
html_document
and some of its extensions such as
html_notebook
. Note that this feature applies not only to source
codes of chunks, but also markdown code blocks.
Supported languages are R, Python, Bash, SQL, C++, Stan, and Julia. To
support code blocks with other languages, add foldable
class to them
(i.e., class.source = "foldable"
as a chunk option).
The default initial state of code folding respects the value given to the
code_folding
parameter. To override the behavior individually, add
fold-none
to disable, fold-hide
to initially hide,
fold-show
to initially show.
You can organize content using tabs by applying the .tabset
class
attribute to headers within a document. This will cause all sub-headers of
the header with the .tabset
attribute to appear within tabs rather
than as standalone sections. For example:
## Quarterly Results {.tabset}
### By Product
### By Region
With html_document()
, you can also specify two additional attributes to
control the appearance and behavior of the tabs. The .tabset-fade
attributes causes the tabs to fade in and out when switching. The
.tabset-pills
attribute causes the visual appearance of the tabs to
be "pill" rather than traditional tabs. For example:
## Quarterly Results {.tabset .tabset-fade .tabset-pills}
If tabbed sections relies on html_dependency_tabset()
, for example by
html_vignette()
, these two attributes are not supported.
You can provide a custom HTML template to be used for rendering. The syntax
for templates is described in the
pandoc documentation. You can also use
the basic pandoc template by passing template = NULL
.
Note however that if you choose not to use the "default" HTML template then several aspects of HTML document rendering will behave differently:
The theme
parameter does not work (you can still provide styles
using the css
parameter).
For the highlight
parameter, the default highlighting engine
will resolve to Pandoc instead of highlightjs and highlighting style will default to
"pygments". "textmate" style is not available as related to highlightjs
The toc_float
parameter will not work.
The code_folding
parameter will not work.
Tabbed sections (as described above) will not work.
Navigation bars (as described above) will not work.
MathJax will not work if self_contained
is TRUE
(these
two options can't be used together in normal pandoc templates).
Due to the above restrictions, you might consider using the includes
parameter as an alternative to providing a fully custom template.