Basic Usage

Often in an interactive R Markdown document, you want to embed snippets of Shiny code without having to specify the corresponding ui function. For example, you may want to use a renderPlot() function without having to create a plotOutput() slot beforehand. In this case, Shiny helpfully associates the corresponding output object to each render function, letting you use Shiny code outside of a full app. However, some functionality is lost in this process. In particular, plotOutput() can take in some optional arguments to set things like width and height, or allow you to click or brush over the plot (and store that information). Previously, this functionality was not available to you outside of a full Shiny app (one with a server function and a ui function, where all the output objects are made explicit).

Now, for the sake of convenience, when working with just snippets of Shiny code, you’ll able to set output arguments directly from the corresponding render function. To do so, use the outputArgs argument, which is available to all render functions. For example, let’s say that you want to render a plot and specify its width to be 200px and its height 100px. Then you should use:

```{r, echo = FALSE}
}, outputArgs = list(width = "200px",
                     height = "100px")

No matter how many arguments you set (all the way from zero to all possible ones), outputArgs always takes in a list (as you’d expect, the default is an empty list, which sets no output arguments). If you try to pass in a non-existent argument, you’ll get an error with the following message (in this example, you tried to set an argument named “not_an_argument”):

Error: Unused argument: in ‘outputArgs’, ‘not_an_argument’ is not an valid argument for the output function

To see this in action, check out the R Markdown script and resulting document below. The document is interactive – brush over the image and see the ‘xmin’, ‘xmax’, ‘ymin’ and ‘ymax’ values change (printed just under the image).


title: Setting `output` args via `render` functions
runtime: shiny
output: html_document

This interactive Rmd document makes use of the `outputArgs` argument now available to all Shiny `render` functions. To give an example, this allows you to set arguments to `imageOutput` through `renderImage`. This means that you don't have to create a `ui` object just to be able to brush over an image. Note that this only applies to snippets of Shiny code during an interactive Rmd (and not to embedded full apps -- the ones you need to call `shinyApp` to run).

### Brushing over an image (and storing the data)

```{r setup, echo=FALSE}

generateImage <- function() {
  outfile <- tempfile(fileext = '.png')
  par(mar = c(0,0,0,0))
  image(volcano, axes = FALSE)
  contour(volcano, add = TRUE)
  list(src = outfile)

```{r image}
}, deleteFile = TRUE, 
   outputArgs = list(brush = brushOpts(id = "plot_brush"),
                     width = "250",
                     height = "250px")

##### Here's some of the brushing info sent to the server:
(brush over the image to change the data)

```{r brush info}
  brush <- input$plot_brush
  paste0("xmin: ", brush$xmin, "; ",
         "xmax: ", brush$xmax, "; ",
         "ymin: ", brush$ymin, "; ",
         "ymax: ", brush$ymax)


### Resizing a plot

```{r plot}
}, outputArgs = list(width = "75%", 
                     height = "250px")


A caveat

It’s important to highlight that you can only use this functionality within an interactive R Markdown document (i.e. you must set runtime: shiny in the header). But even if that is the case, this is only applicable to ui-less pieces of Shiny code. If you embed a full Shiny application in your document and try to use outputArgs, it will be ignored and print the following warning to the R Markdown console (in this case, your ui function would be something like ui <- plotOutput("plot")):

Warning in output$plot(…) :
Unused argument: outputArgs. The argument outputArgs is only meant to be used when embedding snippets of Shiny code in an R Markdown code chunk (using runtime: shiny). When running a full Shiny app, please set the output arguments directly in the corresponding output function of your UI code.

The same will happen if you try to use outputArgs in any other context, like inside a regular (i.e. not embedded) Shiny app. The rationale is that, if you are already specifying a ui function with all the output objects made explicit, you should set their arguments directly there, instead of going through this round-about way.

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